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| M. Aldinucci, M. Torquati, C. Spampinato, M. Drocco, C. Misale, C. Calcagno, and M. Coppo, “Parallel stochastic systems biology in the cloud,” Briefings in Bioinformatics, 2013. [[http://dx.doi.org/10.1093/bib/bbt040| doi:10.1093/bib/bbt040]] | [[http://calvados.di.unipi.it/storage/paper_files/2013_ff_bio_cloud_briefings.pdf|{{:ffnamespace:pdf.png?40}}]] | | | M. Aldinucci, M. Torquati, C. Spampinato, M. Drocco, C. Misale, C. Calcagno, and M. Coppo, “Parallel stochastic systems biology in the cloud,” Briefings in Bioinformatics, 2013. [[http://dx.doi.org/10.1093/bib/bbt040| doi:10.1093/bib/bbt040]] | [[http://calvados.di.unipi.it/storage/paper_files/2013_ff_bio_cloud_briefings.pdf|{{:ffnamespace:pdf.png?40}}]] | | ||
- | |A. Secco, I. Uddin, G. P. Pezzi, and M. Torquati, “Message passing on InfiniBand RDMA for parallel run-time supports,” in Proc. of Intl. Euromicro PDP 2014: Parallel Distributed and network-based Processing, Torino, Italy, 2014. | | | + | |A. Secco, I. Uddin, G. P. Pezzi, and M. Torquati, “Message passing on InfiniBand RDMA for parallel run-time supports,” in Proc. of Intl. Euromicro PDP 2014: Parallel Distributed and network-based Processing, Torino, Italy, 2014. [[http://dx.doi.org/10.1109/PDP.2014.23| doi:10.1109/PDP.2014.23]]| [[http://calvados.di.unipi.it/storage/paper_files/2014_ff_infiniband_pdp.pdf|{{:ffnamespace:pdf.png?40}}]] | |
|M. Danelutto, L. Deri, D. De Sensi, “Network Monitoring on Multicores with Algorithmic Skeletons,” in: Proc. of Intl. Parallel Computing (PARCO), September 2011. | [[http://luca.ntop.org/parco.pdf |{{:ffnamespace:pdf.png?40}}]] | | |M. Danelutto, L. Deri, D. De Sensi, “Network Monitoring on Multicores with Algorithmic Skeletons,” in: Proc. of Intl. Parallel Computing (PARCO), September 2011. | [[http://luca.ntop.org/parco.pdf |{{:ffnamespace:pdf.png?40}}]] | | ||
|M. Drocco, “Parallel stochastic simulators in systems biology: the evolution of the species,” Master Thesis, 2013. | | | |M. Drocco, “Parallel stochastic simulators in systems biology: the evolution of the species,” Master Thesis, 2013. | | | ||
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|M. Aldinucci, S. Ruggieri, and M. Torquati, “Decision Tree Building on Multi-Core using FastFlow,” Concurrency and Computation: Practice and Experience, 26(3):800–820, Mar. 2014. | [[http://calvados.di.unipi.it/storage/paper_files/2013_yadtff_ccpe.pdf |{{:ffnamespace:pdf.png?40}}]] | | |M. Aldinucci, S. Ruggieri, and M. Torquati, “Decision Tree Building on Multi-Core using FastFlow,” Concurrency and Computation: Practice and Experience, 26(3):800–820, Mar. 2014. | [[http://calvados.di.unipi.it/storage/paper_files/2013_yadtff_ccpe.pdf |{{:ffnamespace:pdf.png?40}}]] | | ||
- | |C. Misale, “Accelerating Bowtie2 with a lock-less concurrency approach and memory affinity,” in Proc. of Intl. Euromicro PDP 2014: Parallel Distributed and network-based Processing, Torino, Italy, 2014. [[http://dx.doi.org/10.1109/PDP.2014.50|doi:10.1109/PDP.2014.50]] <fc #00FF00>(Best paper award)</fc>| | | + | |C. Misale, “Accelerating Bowtie2 with a lock-less concurrency approach and memory affinity,” in Proc. of Intl. Euromicro PDP 2014: Parallel Distributed and network-based Processing, Torino, Italy, 2014. [[http://dx.doi.org/10.1109/PDP.2014.50|doi:10.1109/PDP.2014.50]] <fc #008800>(Best paper award)</fc>| [[http://calvados.di.unipi.it/storage/paper_files/2014_pdp_bowtieff.pdf |{{:ffnamespace:pdf.png?40}}]] | |
|M. Aldinucci, F. Tordini, M. Drocco, M. Torquati, and M. Coppo, “Parallel stochastic simulators in system biology: the evolution of the species,” in Proc. of Intl. Euromicro PDP 2013: Parallel Distributed and network-based Processing, Belfast, Nothern Ireland, U.K., 2013. | | | |M. Aldinucci, F. Tordini, M. Drocco, M. Torquati, and M. Coppo, “Parallel stochastic simulators in system biology: the evolution of the species,” in Proc. of Intl. Euromicro PDP 2013: Parallel Distributed and network-based Processing, Belfast, Nothern Ireland, U.K., 2013. | | | ||
|M. Aldinucci, M. Coppo, F. Damiani, M. Drocco, E. Sciacca, S. Spinella, M. Torquati, and A. Troina, “On Parallelizing On-Line Statistics for Stochastic Biological Simulations,” in Euro-Par 2011 Workshops, Proc. of the 2st Workshop on High Performance Bioinformatics and Biomedicine (HiBB), Bordeaux, France, 2012, pp. 3-12. | [[http://www.di.unipi.it/~aldinuc/paper_files/2011_ff_cwc_sim_clustering_HiBB.pdf|{{:ffnamespace:pdf.png?40}}]] | | |M. Aldinucci, M. Coppo, F. Damiani, M. Drocco, E. Sciacca, S. Spinella, M. Torquati, and A. Troina, “On Parallelizing On-Line Statistics for Stochastic Biological Simulations,” in Euro-Par 2011 Workshops, Proc. of the 2st Workshop on High Performance Bioinformatics and Biomedicine (HiBB), Bordeaux, France, 2012, pp. 3-12. | [[http://www.di.unipi.it/~aldinuc/paper_files/2011_ff_cwc_sim_clustering_HiBB.pdf|{{:ffnamespace:pdf.png?40}}]] | | ||
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|M. Aldinucci, S. Ruggieri, and M. Torquati, “Porting Decision Tree Algorithms to Multicore using FastFlow,” in Proc. of European Conference in Machine Learning and Knowledge Discovery in Databases (ECML PKDD), Barcelona, Spain, 2010, pp. 7-23. <fc #008000>(18% acceptance rate)</fc>|[[http://www.di.unipi.it/~aldinuc/paper_files/TR-10-11.pdf|{{:ffnamespace:pdf.png?40}}]] | | |M. Aldinucci, S. Ruggieri, and M. Torquati, “Porting Decision Tree Algorithms to Multicore using FastFlow,” in Proc. of European Conference in Machine Learning and Knowledge Discovery in Databases (ECML PKDD), Barcelona, Spain, 2010, pp. 7-23. <fc #008000>(18% acceptance rate)</fc>|[[http://www.di.unipi.it/~aldinuc/paper_files/TR-10-11.pdf|{{:ffnamespace:pdf.png?40}}]] | | ||
|M. Aldinucci, A. Bracciali, P. LiÒ, A. Sorathiya, and M. Torquati, “StochKit-FF: Efficient Systems Biology on Multicore Architectures,” in Euro-Par 2010 Workshops, Proc. of the 1st Workshop on High Performance Bioinformatics and Biomedicine (HiBB), Ischia, Italy, 2011, pp. 167-175.| [[http://www.di.unipi.it/~aldinuc/paper_files/TR-10-12.pdf|{{:ffnamespace:pdf.png?40}}]]| | |M. Aldinucci, A. Bracciali, P. LiÒ, A. Sorathiya, and M. Torquati, “StochKit-FF: Efficient Systems Biology on Multicore Architectures,” in Euro-Par 2010 Workshops, Proc. of the 1st Workshop on High Performance Bioinformatics and Biomedicine (HiBB), Ischia, Italy, 2011, pp. 167-175.| [[http://www.di.unipi.it/~aldinuc/paper_files/TR-10-12.pdf|{{:ffnamespace:pdf.png?40}}]]| | ||
- | |[ART11] Marco Aldinucci, Salvatore Ruggieri, and Massimo Torquati, “Porting decision tree building and pruning algorithms to multicore using FastFlow,” Università di Pisa, Dipartimento di Informatica, Italy, number TR-11-06, March 2011. |[[http://www.di.unipi.it/~aldinuc/paper_files/TR-11-06.pdf|{{:ffnamespace:pdf.png?40}}]] | | + | |Marco Aldinucci, Salvatore Ruggieri, and Massimo Torquati, “Porting decision tree building and pruning algorithms to multicore using FastFlow,” Università di Pisa, Dipartimento di Informatica, Italy, number TR-11-06, March 2011. |[[http://www.di.unipi.it/~aldinuc/paper_files/TR-11-06.pdf|{{:ffnamespace:pdf.png?40}}]] | |
|M. Aldinucci, M. Meneghin, and M. Torquati, “Efficient Smith-Waterman on multi-core with FastFlow,” in Proc. of Intl. Euromicro PDP 2010: Parallel Distributed and network-based Processing, Pisa, Italy, 2010, pp. 195-199. | [[http://www.di.unipi.it/~aldinuc/paper_files/2010_fastflow_SW_PDP.pdf|{{:ffnamespace:pdf.png?40}}]] | | |M. Aldinucci, M. Meneghin, and M. Torquati, “Efficient Smith-Waterman on multi-core with FastFlow,” in Proc. of Intl. Euromicro PDP 2010: Parallel Distributed and network-based Processing, Pisa, Italy, 2010, pp. 195-199. | [[http://www.di.unipi.it/~aldinuc/paper_files/2010_fastflow_SW_PDP.pdf|{{:ffnamespace:pdf.png?40}}]] | | ||
|M. Aldinucci, M. Danelutto, M. Meneghin, P. Kilpatrick, and M. Torquati, “Efficient streaming applications on multi-core with FastFlow: the biosequence alignment test-bed,” in Parallel Computing: From Multicores and GPU’s to Petascale (Proc. of PARCO 2009, Lyon, France), Lyon, France, 2010, pp. 273-280. |[[http://www.di.unipi.it/~aldinuc/paper_files/2009_fastflow_parco.pdf|{{:ffnamespace:pdf.png?40}}]] | | |M. Aldinucci, M. Danelutto, M. Meneghin, P. Kilpatrick, and M. Torquati, “Efficient streaming applications on multi-core with FastFlow: the biosequence alignment test-bed,” in Parallel Computing: From Multicores and GPU’s to Petascale (Proc. of PARCO 2009, Lyon, France), Lyon, France, 2010, pp. 273-280. |[[http://www.di.unipi.it/~aldinuc/paper_files/2009_fastflow_parco.pdf|{{:ffnamespace:pdf.png?40}}]] | |